Hello everyone! Suppose I defined two compartments 1 and 2 and I have a number of vectors with probabilities of a chromosomal locus to be in a compartment 1 for each chromosome. How can I estimate the Spearman correlation between expression and compartmentalization for each chromosome for the known cell line? What database should be used for obtaining tracks for expression levels?
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little_more •
Well, thank you for the link, but the question was actually about the way to estimate correlation. Moreover, how to use a .bigwig file for that?
I was replying to your question about what "database" to use for the data and your reply about using k562.
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What cell line are you using?
k562, for example. I'd like to compute Spearman correlation as in the Liberman-aiden paper.
Which Liberman Aiden paper?