Biostar Beta. Not for public use.
Where I can download separate complete human chromosome genomes in GenBank format to do alignment?
0
Entering edit mode
2.0 years ago
mathisdead • 10

Where I can download separate complete human chromosome genomes in GenBank format to do alignment? I could find them in FASTA, need full GenBank format with annotation.

ADD COMMENTlink
0
Entering edit mode

I'm pretty sure that you don't need genbank for alignment, why don't you use fasta?

Don't forget to follow up on your previous questions and mark answers as accepted if your issue is solved.

ADD REPLYlink
0
Entering edit mode

mathisdead : If this past question (How to further process and annotate VCF files derived from mapping a patient`s whole genome FASTQs to a separate genes GenBank (.gbk) files? ) is related to this then using chromosomes in genobank format is not the way to go.

ADD REPLYlink
1
Entering edit mode
10 months ago

You can download separate complete human chromosomes (in GenBank format) from NCBI FTP.

ADD COMMENTlink
1
Entering edit mode

RefSeqGene is a set of genomic records for individual clinically-relevant genes, not whole chromosomes. Genome annotation in GenBank flatfile format is available at: ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Homo_sapiens/all_assembly_versions/GCF_000001405.37_GRCh38.p11/GCF_000001405.37_GRCh38.p11_genomic.gbff.gz

ADD REPLYlink
0
Entering edit mode

You're right! I thought im in RefSeq directory, but accidentally entered RefSeqGene. I fixed my answer.

ADD REPLYlink

Login before adding your answer.

Similar Posts
Loading Similar Posts
Powered by the version 2.1