RefSeqGene is a set of genomic records for individual clinically-relevant genes, not whole chromosomes. Genome annotation in GenBank flatfile format is available at: ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Homo_sapiens/all_assembly_versions/GCF_000001405.37_GRCh38.p11/GCF_000001405.37_GRCh38.p11_genomic.gbff.gz
Where I can download separate complete human chromosome genomes in GenBank format to do alignment?
Where I can download separate complete human chromosome genomes in GenBank format to do alignment? I could find them in FASTA, need full GenBank format with annotation.
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Andrzej Zielezinski
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mathisdead •
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mathisdead •
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You can download separate complete human chromosomes (in GenBank format) from NCBI FTP.
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Andrzej Zielezinski
You're right! I thought im in RefSeq directory, but accidentally entered RefSeqGene. I fixed my answer.
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I'm pretty sure that you don't need genbank for alignment, why don't you use fasta?
Don't forget to follow up on your previous questions and mark answers as accepted if your issue is solved.
mathisdead : If this past question (How to further process and annotate VCF files derived from mapping a patient`s whole genome FASTQs to a separate genes GenBank (.gbk) files? ) is related to this then using chromosomes in genobank format is not the way to go.