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Download genes coding for specific length of proteins

Hi, How can I download all the genes of Arthropoda coding for proteins with more than 150 amino acids.

Regards

genome sequence protein
• 1,969 views • link
updated by Elisabeth Gasteiger Elisabeth Gasteiger • written by Houcemeddine Othman • Houcemeddine Othman

2 answers

  1. Go to the NCBI Nucleotide database.
  2. Click Advanced.
  3. In Builder, select:
    • Organism: Arthropoda
    • Feature Key: cds
    • Sequence Length: 450:1000000000
  4. Click Search

After the results are displayed (direct link to results), click Sent to > Complete Record > File > Format: Accession List.

• 0 views • link
written by Andrzej Zielezinski Andrzej Zielezinski

If you want to use UniProt, you can do the following query: https://www.uniprot.org/uniprot/?query=taxonomy%3Aarthropoda%20length%3A%5B150%20TO%20*%5D&sort=score&columns=id%2Centry%20name%2Creviewed%2Cgenes%2Corganism-id%2Clength

Note that the column layout can be modified (for the above URL, I removed protein names and organism, added organism identifier), and you can download the results in tab-delimited format.

• 0 views • link
written by Elisabeth Gasteiger Elisabeth Gasteiger

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