could VirVarSeq take a multi-fasta as reference?
Hi everyone,
I have a small question regarding the program VirVarSeq, I was wondering if the program could take multi-fasta as the reference ?
Thanks
next-gen
snp
virvarseq
• 874 views
•
link
updated
by
Biostar
•
written
by
josquin.daron •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Phasing with Beagle 5.2 and no reference panel
written by Hana •Hi everyone, I have a question about phasing with Beagle 5.2 without a reference panel. I have seen in answers in a couple other posts …
-
Small RNA sequencing adapter trimming and alignment query
written by Bhumi •Hi there, I know it might a naïve question regarding the read alignment. I have a small RNA seq data Fastq files (enriched specifically for …
-
Strand aware gff3 to protein fasta
written by karthicHi everyone, I know there are lots of program which can translate the nucleotide fasta to protein fasta in all 6 frames or the frame …
-
multifasta length uniformity
written by Unalibun •Hi everyone, I am performing the phylogenetic reconstruction of my non-model organism, I am working with the BUSCOs output (single copy sequences files) form 7 …
-
Recommendation to blast short <1kb sequences contained in a fasta file against a fastq file (obtain…
written by shawn.3.slater •Hi everyone, I'm a novice in the world of bioinformatics and I was wondering if anyone could help me blast a short series of sequences …
-
BWA mem of a heavily masked reference index takes more time than the normal reference?
written by Duarte MolhaHi everyone I have a question regarding BWA mem alignment I was interested in finding out the performance gains I would obtain from creating a …
-
CEGMA analysis, core gene or protein?
written by setaHi all, First of all, sorry for this question, but I have to ask. I was wondering if there are 248 conserved **genes** or **proteins** …
-
getting fasta sequences(proteome) from a file referencing another fasta file (tf)of the same organi…
written by kws15 •Hi everyone, Basically I have 2 large fasta sequences file, the first one is the proteome fasta sequences (all the protein sequences), the second one …
-
splitting fasta sequences into variables
written by Bio Dalmenda •Hi everyone I am really new to perl and I wish if some one could ever help I have a multi fasta file, I need …
-
Multi-Fasta Sequence Input C++ Library
written by Lexxx233 •<p>Hi, I am new to bioinformatics and I was wondering if there is any C++ library for efficiently reading and indexing multi-fasta file?</p>