tool to link transcription factors (DEGs) with target genes (DEGs)?
Is there an online tool where i can input in all my DEGs and see if there is possible link between transcription factors which were differentially expressed and its target genes which were also differentially expressed?
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GouthamAtla
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Muha0216 •
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Muha0216 •
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You can look at cytoscape apps like iRegulone
I also came across TRRUST recently, which is a database of TF targets.
Keep in mind that TF regulation is very cell type specific and context dependent. The databases are built from data from various cell-types and different cellular context. So check information relevant to the organism / cell type you are working with.
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