Hi,

I generated morgan fingerprints using rdkit for 1000 compounds. So, I have a matrix with 1000 rows and 1024 columns. I'd like to find the substructure (as SMILES) for each of the 1024 bits (columns) in the matrix.

This post (http://www.rdkit.org/docs/GettingStartedInPython.html#explaining-bits-from-morgan-fingerprints) explains something but I'm not sure how to modify it for all 1024 bits.

Kindly assist