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Find "domains" in a protein sequence

Dear All,

I have a protein sequence "NP_001318.1". I would really appreciate answer to this query below:

a) Find "domains" in the protein sequence?

Thanks much, DK

sequence protein domains
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updated by arta arta • written by DanielC DanielC

2 answers

Running it through InterPro will give you the domains present in the sequence

An alternative is doing a blast on NCBI webblast which will also indicate you the domains (from CDD in that case)

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written by lieven.sterck lieven.sterck

To me it looks an assignment, yet, go to NCBI and paste the code "NP_001318.1", on the right side under the "Analyze this sequence " section, click the "Identify Conserved Domains" and get your answer.

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written by arta arta

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