More posts like this
-
How to split all fasta sequences in a multifasta file into ten equal parts
written by debarunacharya 0Hi. I have a multifasta sequence containing some of the human proteins of my interest (N>5000). all the proteins are usually of different length. I …
-
What does this code mean when using BBMap?
written by camerongubbins5 0I am currently in the Unix environment. I am a little confused about some code I have found when utilising BBMap to translate the nucleotide …
-
Nucleotide to amino acid conversion of multiple sequences
written by lokraj2003 12I have 220 nucleotide sequences. They are around 7000 bp and each of them should translate into one protein of around 2100 amino acids. There …
-
How accurate is UniProt?
written by alexille5640 1I am curious about the reliability of Uniprot amino acid sequences? Say I want to do the following: 1. Reverse translate a reviewed Uniprot amino …
-
Bioinformatic tools for identifying proteins with certain amino acid sequence motif
written by Jung-ho Kong 0Hi Thank you so much in advance. I hope to know if there is any tool that identifies proteins that contain certain amino acid sequence. …
-
Translate nucleotide to amino acid (not including intron)
written by nut_B 1Hello, If I want to translate nucleotide to amino acid but this amino acid have not intron included. I would like to translate because I …
-
Is there a way to translate amino acid sequences into atomic sequences?
written by Naresh 6Hi, Is there any software which will translate amino acid sequence into atomic sequences. Please help me. Kind regards Naresh
-
Tool for translation of large set of DNA sequences to protein
written by onspotproductions 15<p>I have completed a De novo assembly of RNA-seq data of an organism with a currently unknown genome. I would like to find a tool …
-
Translating Nucleotide MSA to Amino Acid MSA
written by weslfield 9<p>Hi, so I have a nucleotide mutliple sequence alignment that I would like to translate into an amino acid MSA based on the reading frame …
-
Bash Loop For Job Submission
written by MAPK 214<p>Hi guys, I have thousands of fasta files each with one sequence only. I need to run a command in my linux/unix system to perform …
You'll need to be a bit more specific with regard to what you aim to get and how that doesn't work.
You should normally specify where a program originates from since there may be multiple programs with same/similar names. I assume this is from
EMBOSSsuite. Here is the help page for sixpack.