MACS's option corresponding to HOMER's -sspe

HOMER provides "-sspe" option if your reads are strand-specific paired-end. HOMER will interpret the intended strand for the 2nd read in the mate-pair.

How does MACS handle "strand-specific" PE reads? Does "-f BAMPE" also handle SS-PE ?

chip-seq homer macs strand-specific paired-end

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written 8.6 years ago by ChIP-seeker 0

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