How to better find and select the appropriate data set for my research?
I am developing a database for single-copy genes.
To test my methods and parameters I need some RNA-Seq data sets in Arabidopsis. I wonder how to choose the most appropriate data sets for my work among thousands of data sets published for Arabidopsis. These thousands of data sets make me confused and I am not sure that a data set I choose to work on, is the best data set or not? Are there any reference data sets that I can use for my work? or I have to search databases and finally find data sets that are suitable for my research?
For my case I need some trust-able RNA-Seq data sets in Arabidopsis in 3 different tissues in 3 different life stages.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Correct Data from TCGA for EdgeR Analysis
written by joseph.landry •
-
How to combining the RNA-seq data from different tissues of one individuals plant
written by yahalashinnosuke •
-
Need help to do single denovo assembly with multiple RNA seq data
written by ashokkumar.mb •
-
Comparing transcriptomic data of the same species from different developmental stages
written by VBer
-
Data sets suitable for analysing gene expression
written by fawazfebin
-
How to integrate multiple data sets from microarray platform prior meta-analysis?
written by rice.researcher
-
plant housekeeping genes without paralogs
written by utsafar
-
Combine two RNA-seq normalized data sets from different sources for WGCNA
written by jerrywu1987 •
-
Can I assemble a Eukaryote RNA-Seq using my laptop?
written by utsafar
-
finding a reposistory of ribo-seq data set in arabidopsis
written by jivarajivaraj •
Not an answer but you may find this resource, which is supported by the J Craig Ventor Institute and the University of Cambridge, useful: https://www.araport.org/
Other than that, it's really just about searching for the right study via, for example:
Currently I am using J CRAIG VENTER INSTITUTE data sets obtained from EBI ENA for my work. But I said may be there is some (other) reference RNA-Seq data sets. Thank You
You can have look at Encode . Hope this helps you out.