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Question: How to run SNPEff jar for a batch of VCF files using GNU parallel tool?
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How to run SNPEff jar for a batch of VCF files (300 items) using GNU parallel tool? Need a code example. Found only one example somehow similar to my question Thx.

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I think you need to use:

GNU parallel is a shell tool for executing jobs in parallel using one or more computers. A job can be a single command or a small script that has to be run for each of the lines in the input. The typical input is a list of files, a list of hosts, a list of users, a list of URLs, or a list of tables. A job can also be a command that reads from a pipe. GNU parallel can then split the input and pipe it into
commands in parallel.

Nice tutorial can be found:

ADD REPLYlink 2.0 years ago
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If you add an example of how you do it without GNU Parallel, then you may have more luck getting a usable answer.

ADD REPLYlink 14 months ago
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