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Comparing Illumina with Affymetrix data

I have data from a 50k Illumina bovine chip and data from a 600k Affymetrix bovine chip and I would like to do analyses on the SNPs that are common to both chips.

Do you know a way to get all the common SNPs from both chips since Illumina and Affymetrix don't use the same SNP IDs and genome assembly?

Thank you

snp illumina affymetrix
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updated by Rashedul Islam Rashedul Islam • written by alcar • alcar

1 answer

Two relevant discussion on the question:

  1. Mapping Illumina Snp Ids To Rs Ids.

  2. rs id comparison between genome version or build.

• 0 views • link
written by Rashedul Islam Rashedul Islam

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