Filtering vcf FORMAT?
I have a vcf file with contains GT:DS:GP for FORMAT field, how can i only keep the GT? The vcftools "--extract-FORMAT-info GT" command will at the same time filtering all other columns. But i wish to keep those.
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Pierre Lindenbaum
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amber.zqt •
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amber.zqt •
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https://samtools.github.io/bcftools/bcftools.html
... and "FORMAT" to remove all FORMAT tags except GT.
bcftools annotate -x 'FORMAT' in.vcf
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