Sleuth plot_pca function Question
I am plotting a PCA of some tissue samples that I have. The tissue types are: Macula Retina MacRPE Cornea
Right now when I use this plot_pca function my PCA shows all tissue types. Is there something I can add to this function to exclude one or multiple tissue types?
# Plot Basic PCA:
plot_pca(so, color_by = 'tissue', point_size = 7)
• 2,007 views
•
link
written
by
scottschu97 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Making PCA plot using variance instead of counts on Sleuth (plot_pca)
written by unkown •
-
PCA proteomic DEP
written by Morris_Chair
-
How to extract proteins from PCs in plot_pca in DEP package?
written by Wang Cong •
-
PCA scatterplot with different shapes for different clusters
written by myyid68 •
-
Weird results after batch effect removal using ComBat.
written by goldie.ed •
-
How to add linear regression line and change the colors of my hexbin scatterplot?
written by Zee_S
-
Sleuth: What is the correct function for fitting my sleuth object
written by scottschu97 •
-
Sleuth Error: System is computationally singular
written by scottschu97 •
-
remove batch effect for multiple tumor data
written by hellocita •
-
Comparing Expression Values From Two Tissues (Under 2 Conditions In 9 Subjects)
written by Colm •
