This is a test version of Biostars. For the public version, visit https://www.biostars.org.
how to haplotyping from vcf file?how to analysis ld block?

hi i am bioinformatics beginner i have a vcf file(this file include snp and positions by samples) how to haplotyping vcf file ? how to analysis ld block? i want see haploytyping group by phenotype data and draw ld block plz explain detaily thanks all!

genome snp gene
• 2,612 views • link
updated by shubhra.bhattacharya shubhra.bhattacharya • written by mmh7272 mmh7272

1 answer

Try Genotypevcf in GATK.

• 0 views • link
written by shubhra.bhattacharya shubhra.bhattacharya

okay i try thank u for ur tip

• 0 views • link
written by mmh7272 mmh7272

Can you explain how that is going to help with creating haplotypes? As far as I know Genotype(g)vcf is used for calling variants.

• 0 views • link
written by WouterDeCoster WouterDeCoster

thanks u for ur coment,Dr wounter de coster, Do u hava another tip about haplotype and ld block?

• 0 views • link
written by mmh7272 mmh7272

Log in to answer this question.

More posts like this