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ClustAGE error on Linux - "Support directory 'bin' is not present"

I'm new to using Linux, and I'm trying to run ClustAGE through the command line. As per the Read Me, I've installed bwa and phylip (I think correctly).

When I try and run ClustAGE using the following command:

perl ClustAGE.pl -f AGE_list.txt

I get the following error:

ERROR: Support directory 'bin' is not present in /home/sara/Bioinformatics_programs/ClustAGE.linux.v0.7.7/bin

In that bin folder I've copied the following:

AGE_list.txt
blastn
bwa
ClustAGE.pl
makeblastdb
neighbor
retree
seqboot

Not too sure what I'm missing. Any help would be greatly appreciated.

pangenome
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updated by Ram Ram • written by s.pidcock94 • s.pidcock94

Hi

How can I visualize heat map on iOTL? Did you get the results for your data? I am having trouble in visualization part.

• 1 views • link
written by ThulasiS ThulasiS

1 answer

The ClustAGE.pl script is looking for a bin directory in the same path where it is located. If you move ClustAGE.pl and AGE_list.txt to /home/sara/Bioinformatics_programs/ClustAGE.linux.v0.7.7/ and then run the command again, it should work.

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written by vimalkvn vimalkvn

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