Hi!
I have got a sam file which looks good but when I convert it to bam file, the file became truncated. The tail of bam file looks weird. Could anyone suggest me what could be the reason?
Thanks
You need to give more information on how you process your files. How is the sam file generated and how is it converted to bam ? Do you get any error message and if so what is it ?
Hi, I am running FASTX and got this error: fastq_quality_trimmer: Premature End-Of-File Does anyone know what it means? could my file be truncated? thanks!
Hi I could extract the unmapped reads from the bwa-mem alignment file in SAM format using below command samtools view -S -f0x4 alnIRGSP.sam > UNMAP.sam. …
<p>Dear BioStarers,</p> <p>When I convert my sam file to bam file, I got "truncated file" in prompt, and also "[sam_read1] reference '503821040998320619' is recognized as …
This is a regular question, not a forum post. I changed the post type to question.
You need to give more information on how you process your files. How is the sam file generated and how is it converted to bam ? Do you get any error message and if so what is it ?
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