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Differential gene expression anaylsis -Ballgown
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23 months ago
amy16 • 40

Hi, Can the output from stringtie (transout.gtf, .ctab files) be used directly for accessing the assembly data or does it have to pass through the match assembled transcripts to annotated transcripts?

-Thanks in advance

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Only if you want to annotate the transcript to actually know which genes they belong to

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20 months ago
Hussain Ather • 920
National Institutes of Health, Bethesda…

They can be accessed directly with Ballgown or cufflinks.

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