Differential gene expression anaylsis -Ballgown

Hi, Can the output from stringtie (transout.gtf, .ctab files) be used directly for accessing the assembly data or does it have to pass through the match assembled transcripts to annotated transcripts?

-Thanks in advance

rna-seq ballgown stringtie

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updated 8.6 years ago by Hussain Ather

• written 8.6 years ago by amy16 •

Only if you want to annotate the transcript to actually know which genes they belong to

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written 8.6 years ago by Kristoffer Vitting-Seerup

1 answer

They can be accessed directly with Ballgown or cufflinks.

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written 8.6 years ago by Hussain Ather

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