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Where to download gff3 file for EcoCyc data?

I'm looking for a gff3 file with EcoCyc IDs. Do I need to just download the version from Ensembl and then convert the IDs? Alternatively, is there a flat file from EcoCyc that has the positions of all of the genes in E. coli?

genes assembly gff3 ecoli
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updated by tdmurphy tdmurphy • written by O.rka O.rka

1 answer

I think EcoCyc uses the same IDs as EcoGene (EG#####), which are available on the GenBank and RefSeq annotations at NCBI. Try the "Download" links at the right from this page: https://www.ncbi.nlm.nih.gov/assembly/GCF_000005845.2

Both GFF3 and flatfiles are available.

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written by tdmurphy tdmurphy

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