This is a test version of Biostars. For the public version, visit https://www.biostars.org.
package 'karyoploteR' is not available (for R version 3.3.3) 
source("https://bioconductor.org/biocLite.R")

library(rlang)
library(karyoploteR)
library(biomaRt)
library(regioneR)
library(GenomicRanges)

package 'karyoploteR' is not available (for R version 3.3.3)

I've downloaded all packages, updated everything but this message wont disappear.

platform x86_64-apple-darwin13.4.0
arch x86_64
os darwin13.4.0
system x86_64, darwin13.4.0
status
major 3
minor 3.3
year 2017
month 03
day 06
svn rev 72310
language R
version.string R version 3.3.3 (2017-03-06) nickname Another Canoe

karyoploter r
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updated by Charles Plessy Charles Plessy • written by kalahari • kalahari

1 answer

The karyotypeR page on the Bioconductor website indicates that the karyotypeR package requires a version of R equal or higher to 3.4. So you would need to upgrade R (or install R >= 3.4 in parallel with your current version), in order to use karyotypeR.

• 0 views • link
written by Charles Plessy Charles Plessy

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