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msimmer92
msimmer92
Reputation:
310
Joined:
9.3 years ago
Last seen:
1.4 years ago
Location:
Germany

Computational biologist from Uruguay living in Germany. PhD student. Bioinformatician by day, Hannah Montana by night.

Latest posts by user
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Comment: Comment: STAR 2.7.11b FATAL ERROR could not open genome file genomeParameters.txt but it
written by msimmer92 msimmer92
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Comment: Comment: STAR 2.7.11b FATAL ERROR could not open genome file genomeParameters.txt but it
written by msimmer92 msimmer92
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4 replies
1.8K views
STAR 2.7.11b FATAL ERROR could not open genome file genomeParameters.txt but it is not generated in this version
star
updated by Ram Ram • written by msimmer92 msimmer92
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Comment: Comment: Gold standard for bulk RNA-seq downsampling - number of uniquely mapped reads
written by msimmer92 msimmer92
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Comment: Comment: Gold standard for bulk RNA-seq downsampling - number of uniquely mapped reads
written by msimmer92 msimmer92
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3 replies
4.3K views
Gold standard for bulk RNA-seq downsampling - number of uniquely mapped reads
uniquely rna-seq mapping bulk downsampling
written by msimmer92 msimmer92
1 vote
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Comment: Comment: How to filter out a list of specific genes from the DESeq object in R - bulk RNA
written by msimmer92 msimmer92
1 vote
4 replies
9.1K views
How to filter out a list of specific genes from the DESeq object in R - bulk RNA-seq differential expression
r bulk object deseq2 filter
written by msimmer92 msimmer92
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Comment: C: Generalizing snakemake MACS2 code - WildcardError Wildcards in input files canno
written by msimmer92 msimmer92
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3 replies
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Generalizing snakemake MACS2 code - WildcardError Wildcards in input files cannot be determined from output files: 'sample'
snakemake
updated by Jeremy Leipzig Jeremy Leipzig • written by msimmer92 msimmer92
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Answer: A: Snakemake SyntaxError: No rule keywords allowed after run/shell/script/wrapper/c
written by msimmer92 msimmer92
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Comment: C: Snakemake SyntaxError: No rule keywords allowed after run/shell/script/wrapper/c
written by msimmer92 msimmer92
1 vote
4 replies
5.0K views
Snakemake SyntaxError: No rule keywords allowed after run/shell/script/wrapper/cwl in rule
snakemake syntaxerror rule keywords
written by msimmer92 msimmer92
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Comment: C: If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
written by msimmer92 msimmer92
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Comment: C: DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' lengt
written by msimmer92 msimmer92
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Comment: C: Heterogeneity from bulk ChIP-seq or ATAC-seq data
written by msimmer92 msimmer92
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3 replies
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Heterogeneity from bulk ChIP-seq or ATAC-seq data
heterogeneity chip-seq atac-seq clustering
updated by jared.andrews07 jared.andrews07 • written by msimmer92 msimmer92
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Comment: C: Downsampling single-end human ChIP-seq data
written by msimmer92 msimmer92
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Comment: C: Get all gene symbol in kegg pathway with clusterProfiler
written by msimmer92 msimmer92
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Comment: C: Downsampling single-end human ChIP-seq data
written by msimmer92 msimmer92
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