BBMerge saving unmerged reads
Is there any way to save the unmerged reads to separate files when using bbmerge?
I am attempting to merge reads with overlap using bbmerge, but would also like to save unmerged reads, preferably separately to R1 and R2 files.
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finswimmer
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from the mountains
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from the mountains
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Hello,
bbmerge has the paramater outu for this. For example:
bbmerge in1=read1.fastq.gz in2=read2.fastq.gz out=merged.fastq.gz outu1=read1.unmerged.fastq.gz outu2=read2.unmerged.fastq.gz
fin swimmer
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