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I would like to dowload triple negative breast cancer data from GDC Data Portal. But I couldnt find data corresponding to this type of cancer . Can anyone help please? Thanks in advance.
Look here: How to download triple negative breast cancer RNA-seq fpkm data from GDC.
Thank you Kevin . I shall have a try.
Sorry Kevin. I couldn't find the 'er_status_by_ihc', 'pr_status_by_ihc', 'her2_status_by_ihc' columns in txt files you mentioned. What could be wrong? Thanks in advance.
They are definitely there. er_status_by_ihc, for example, is in cell AR1.
This is the exact file: https://portal.gdc.cancer.gov/legacy-archive/files/735bc5ff-86d1-421a-8693-6e6f92055563
Yes Kevin, found the columns after downloading the file. Great thanks
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