Tool for Pathway Analysis on SKAT results
Hi,
I was wondering if there is a tool, or at least a clearly defined procedure, available that could perform pathway analysis on SKAT results and take advantage of the P-values and common/rare variant assignments.
In the SKAT output, I have gene names, the number of rare variants assigned to each gene, the number of common variants assigned to each gene, and a P-value for each gene.
The priority is using P-values, if the common/rare variant numbers alone can't be used. I don't care about directionality.
Thank you.
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