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Detection of chimeric / fusion transcript using nanopore long reads

Hi,

I've some Direct RNA and cDNA nanopore sequencing and would like to detect some chimeric transcript. For now I aligned the reads using minimap2 and the results are quiet nice. Looking in the literature there is no current tools to perform long read fusion detection. Any idea ?

nanopore chimeric
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written by Nicolas Rosewick Nicolas Rosewick

Hello Nicolas! Any luck with this? I am in the same place right now (by the way, did you use total or polyA RNA for your sequencing)?

Thanks,

Peny

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written by pennakiza pennakiza

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