Hi,

I am trying to run a command:

bedtools intersect -wao -f 0.75 -a A.gtf -b B.gtf > output.bed

and I get segmentation fault.

The command runs fine without the -wao option.

There are apparently no memory issues. I am running the code on a linux cluster and running the free -m command shows that there is enough memory on the node.

I looked that the bedtools intersect documentation and it mentions that the -wao option is restricted by the -f option. Is that what causing the segmentation fault ?

Your help will be greatly appreciated.

Thanks