I normally use R and Bioconductor for array CGH analysis, but I would like to find a GUI tool that I could recommend to my colleagues. Basically, it would need to do visualisation and segmentation, and if possible it would be free. I have come across CGH-Explorer already, but have yet to try it as it no longer seems to be updated.
Many thanks
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written
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Danielsbrewer
2 answers
Updated link: http://bioinfo-out.curie.fr/projects/CAPweb/
Old link broken: http://bioinfo.curie.fr/CAPweb/
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written
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Fred Fleche
VAMP: visualization and analysis of array-CGH, transcriptome and other molecular profiles.
ArrayCyGHt: a web application for analysis and visualization of array-CGH data.
Look into this article: A new look towards BAC-based array CGH through a comprehensive comparison with oligo-based array CGH. They have used "CGHviewer" which is available on request from the authors.
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