Create mean coverage plot
Hi :) I'm a newbie in bioinformatics and R programming, so I'll appreciate any help. I have few excel files with mean coverage at different locations of different genes at different chromosomes (each excel file contains the same genes locations, only the mean coverage changes). I'm trying to plot the data as one of the following plots:
Anyone know the plot and know to tell me how to do it?
Thanks!
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Where is your example plot?
You might be interested to check
deepTools(which I'm using a lot these days),ngs.plotto avoid dealing with a number ofexcelfiles (i.e. you can directly process bam files).![Mean coverage[1]
I fixed the link for the plot in the original post.
You may want to take a look at my recent posting here: C: Histogram showing overlap between 2 bed files
It looks like an ordered version of my my plot, i.e., they've ordered the coverage from low-to-high, and added horizontal bars for things like upper- and lower- quartiles (I presume)