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how to save hisat reads info to txt

At the end of hisat, the reads and percentage is usually print out directly. Does anyone know how to save this printout into a txt file?Thanks!

rna-seq

Do you still use HISAT rather than the successor HISAT2, as recommended by the developers? If you use HISAT2, use the --summary-file option which will save the summary to a file.

Thank you everyone. It works~

2 answers

append &> hisat.log at the end of your command

You can redirect standard out (things printed to screen) and any errors to files. hisat your commands > hisat.log 2>error.log

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