SHOW MY FASTA SEQUENCE INTO 3D PROTEIN MODEL FROM PDB
I have a fasta sequence,from my own.I want to show it (highlight) into 3D model already downloaded from PDB.There is any way to do it?Thanks in advance!!!
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uirajan-kuki
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Please don't use ALL CAPS in posts. You know what that is considered equivalent to on internet forums.
You should be able to use PyMOL to do this.
I'm so sorry for caps lock.I found an easy way through CHIMERA.Thanks for all