Question

Finding GO terms for an organism not in a GO database

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6.5 years ago

kgbenn123 ▴ 20

I'm trying to find the GO terms for my bacterium on AmiGO, but my organism is not listed in the species list. I've tried other websites with the same issue; any ideas as to what I'm doing wrong?

GO terms gene ontology ncbi amigo • 1.4k views

ADD COMMENT • link updated 6.5 years ago by pfs ▴ 280 • written 6.5 years ago by kgbenn123 ▴ 20

score 1 · Answer 1 · 2017-10-30

Not my area of expertise but you could try http://bacteria.ensembl.org/index.html to get a list gene in your bacteria. Then use that list along with the most closely related nacteria that does exist in AmiGO to do what you intended. I am sure if there is an easier way that someone will offer up.