DiffBind DESeq2 for multiple comparisons
I was wondering how to go about getting differential peak calls along two trajectories, for instance age and sex with DESeq2 under the auspices of DiffBind, as I have only found how to do pairwise comparisons? Thanks.
• 155 views
•
link
updated
by
tarek.mohamed
•
written
by
rbronste
•
written
by
rbronste
1 answer
Hi,
You can do this using deseq2 by modifying the deseq2 design in a way that fits your need. Please have a look at this discusion C: How is the design in DESeq2 work?
T
• 0 views
•
link
written
by
tarek.mohamed
Log in to answer this question.
More posts like this
-
Can DiffBind Perform Peak Calling and Differential Analysis Directly from BAM Files?
written by Siqi •
-
Alternative/Incorrect DiffBind outputs for each contrast when providing entire vs. partial datashee…
written by gkunz •
-
Differential expression analysis in different groups of individual (GTEx)
written by Boboboe •
-
Complicated Multi-factor Differential Expression
written by gradstudentNew •
-
Consensus motif of closely related TFs
written by rbronste
-
Adjusting for uneven Nextseq loading
written by rbronste
-
RSAT gives strange motif calls
written by rbronste
-
Filter HT-Seq output for gene subclasses
written by rbronste
-
Bed to BAM information transfer
written by rbronste
-
Quantification And Comparison Of Chip-Seq Peaks
written by Ying W
