Nextera Rapid Capture Exome Regions hg38
Hi everyone,
Has anyone worked with Nextera Rapid Capture WES on hg38 assembly?
Illumina has only hg19 targeted regions as a bed file on their website.
I'm wondering anyone has a lifted-over file and thoroughly checked it's all fine.
Many thanks.
Mamduh
• 2,779 views
•
link
updated
by
meizi2015 •
•
written
by
maduh17 •
•
written
by
maduh17 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
GIAB Benchmarking
written by Mat •
-
Align Illumina short reads to a subset of human reference genome
written by francisco •
-
target vs. bait BED files for Illumina WES
written by Juan Cordero
-
MNAse-Seq Dataset for Different Cancer Types
written by rohitsatyam102
-
GATK liftOver chain file for human_g1k_v37.fasta
written by brismiller •
-
Using hg38 assembly with hg19 exome capture data
written by jdm204 •
-
Version history and design files for exome kits from Agilent, Roche(Nimblegen), and Illumina
written by predeus
-
Issue with ExAC and 1000g hg38 lifted-over data and systematic failure of annotation softwares!
written by reza.jabal
-
Exome sequencing and linkage analysis : obtain a list of SNPs
written by wester1086 •
-
hg19.p13 annotation files
written by deepthithomaskannan
Hi, did you find the hg38 exome targeted regions?
Can't you do a liftover/convert between versions, for example on the Ensembl site ?
I can do convert to hg38 only if there is GRch38, but i only find GRCh37/hg19.