Solvent- Accessible Surface Area
I am working on protein docking. I want to extract the coordinates of the surface atoms i.e coordinates of the atoms on the accessible surface area. I want to use python coding only and I dont want to rely on any other software.
Can anyone please guide me about the approach? Does Biopython have tools for this?
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bushranazir.333 •
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Biopython module for DSSP seems to do that http://biopython.org/DIST/docs/api/Bio.PDB.DSSP%27-module.html
I dont think that it deals with the coordinates of surface atoms.
If you could convince yourself to use JAVA and jmol, then you may find this of use: http://jmol.sourceforge.net/docs/surface/
I am restricted to use python only