Biostar Beta. Not for public use.
Analysis ready RNA Seq repository
0
Entering edit mode
2.8 years ago
kakaru • 0

Hi,

Recently recount2 was published:

A: Processed RNA-SEQ Datasets

I wonder if anyone knows about similar resource to recount2? I searched the forum and an Australian resource was mentioned.

Also the EBI expression atlas is good but it seems only provide read counts.

ADD COMMENTlink
0
Entering edit mode
13 months ago
Republic of Ireland

For cancer, cBioPortal holds RNA-seq (and other) data on many different types of cancers. You can access them pretty quickly for your chosen cancer type through the Download Data tab.

ADD COMMENTlink
0
Entering edit mode
13 months ago
Ron • 950
United States

GDC has cancer data processed.

There are 11k samples.

https://portal.gdc.cancer.gov/

ADD COMMENTlink
0
Entering edit mode
22 months ago
igor 7.7k
United States

There is also TOIL: https://xenabrowser.net/datapages/?host=https://toil.xenahubs.net

ADD COMMENTlink
0
Entering edit mode
2.1 years ago
Naim.Mahi • 40
University of Cincinnati College of Med…

Check our newly developed tool GREIN at: https://shiny.ilincs.org/grein/

ADD COMMENTlink
2
Entering edit mode

Looks really nice. Can I suggest adding normalized values in addition to the raw counts? Since you have all the downstream analysis, I assume they are already calculated. That way, users can check the expression pattern of their favorite gene. In my experience, that would be very valuable.

ADD REPLYlink
0
Entering edit mode

Thanks for your suggestion. We are planning to provide the normalized data as well in our upcoming release.

ADD REPLYlink

Login before adding your answer.

Similar Posts
Loading Similar Posts
Powered by the version 2.1