Differential ChIP-seq analysis
Hello everyone,
I am interested in differential ChIP-seq analysis. Does anyone know some real validated datasets that are publicly for this kind of analysis?
Best regards, Nemanja
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nvucic •
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nvucic •
1 answer
ENCODE has thousands of ChIP-seq samples, including cell lines treated with various compounds and untreated lines. Those are very good sets to play with to get the hang of the things.
If you want a more concrete set, you can try the small set from the DiffBind package vignette.
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