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RIGER extension in GENE-E

Hello all,

I am trying to make RIGER work through GENE-E. Earlier I tried adding the RIGER extension to home directory as instructed at https://software.broadinstitute.org/GENE-E/extensions.html. But could not make it work.

Has anyone faced any issue similar to above while using RIGER through GENE-E. Are there any other alternative tools for RIGER analysis? Please let me know. Thank you

Regards, Ashwani

sequencing next-gen crispr gene ranking
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updated by natallah • natallah • written by ashwani.vit • ashwani.vit

What means "could not make it work"? What were the error messages? What was the command you used?

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written by h.mon h.mon

Hi,

This is what I did

1) Download the RIGER.jar file

2) Put it in the extensions directory. (/home/GENE-E/extensions)

3) Launched the GENE-E

After launching GENE-E (GUI), where should I navigate to find the RIGER option? I am not getting any error message. I am having difficulty in navigating RIGER extension. Please help.

Thank you Ashwani

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written by ashwani.vit • ashwani.vit

1 answer

After launching GENE-E, it will be under the "Tools" tab

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written by natallah • natallah

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