hi ,
i am trying to intsall platypus using the following commands :
for compilinf platypus: sudo apt-get install libz-dev
and i get the following :
Reading package lists... Done
Building dependency tree
Reading state information... Done
Note, selecting 'zlib1g-dev' instead of 'libz-dev'
zlib1g-dev is already the newest version (1:1.2.8.dfsg-2ubuntu5.1).
The following packages were automatically installed and are no longer required:
i965-va-driver libaacs0 libavcodec57 libavformat57 libavutil55 libbdplus0
libbluray1 libchromaprint-tools libchromaprint0 libcrystalhd3 libdiscid0
libgme0 libgsm1 libmodplug1 libmp3lame0 libopenjpeg5 libqt4-designer
libqt4-help libqt4-scripttools libqt4-svg libqt4-test libqtassistantclient4
libschroedinger-1.0-0 libshine3 libsoxr0 libssh-gcrypt-4 libswresample2
libtwolame0 libva1 libx264-148 libx265-79 libxvidcore4 libzvbi-common
libzvbi0 mesa-va-drivers python-libdiscid python-mutagen python-qt4
python-sip snap-confine ubuntu-core-launcher va-driver-all
Use 'sudo apt autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 14 not upgraded.
then i downloaded the latest platypus release from the link :
http://www.well.ox.ac.uk/platypus
after it i gave the following commnads :
$tar xvzf Platypus-latest.tgz
$cd Platypus_0.8.1/
$ ./buildPlatypus.sh
which gave me an error :
suhail@suhail-HP-Notebook:~/Desktop/Platypus_0.8.1$ ./buildPlatypus.sh
Building Platypus
running build
running build_py
running build
running build_py
running build
running build_py
running build
running build_py
running build
running build_py
running build
running build_py
running build
running build_py
running build
running build_py
running build
running build_ext
building 'htslibWrapper' extension
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-lMBuS3/python2.7-2.7.12=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c htslibWrapper.c -o build/temp.linux-x86_64-2.7/htslibWrapper.o -msse2 -msse3 -funroll-loops -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC
htslibWrapper.c:243:25: fatal error: htslib/bgzf.h: No such file or directory
#include "htslib/bgzf.h"
^
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
Setup failed. Check previous lines for errors.
how can i successfully build it .
help needed again !!!!
thank you
platypus
error