Entering edit mode
6.6 years ago
iMorbit
▴
10
Hi all! First time poster.
I'm trying to come up with some metrics I could use for analysing and comparing Hi-C reads (which are being called as peaks in a manner similar to ATAC-seq peaks). As well as comparing the Hi-C peaks to ATAC-seq peaks. I've thought of a few already.
Metrics
- Overlap between TR pairs for an individual
- Overlap within one TR pair between individuals
- Combine all three TR pairs within each individual, then compare combined peaks between individuals.
- Overlap/total peaks within an individual
- Overlap/total peaks between individuals
- Genomecov TR pairs for each individual
- reldist for each TR pair within an idividual
- reldist for TRs combined within individuals (will this make the previous metric obsolete?)
- Reads per stage of pipeline
- picard QualityScoreDistribution (useful for assessing general quality of peaks?)
Thanks in advance!