LDplot using a matrix in R
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6.7 years ago
merodev ▴ 150

I have a matrix of LD values for different sites. examplematrix https://ibb.co/eaURxQ I would like to get a LD plot like these: LDplot https://ibb.co/cqAzHQ or LDplotbig https://ibb.co/mqqYcQ I want the color shades to depict the numbers but the numbers do not need to be present. Is there a way to do this in R. I looked up the LDheatmap package but it looks like it does its own calculation and I cannot figure out a way to just use matrix as an input. Thanks for any help.

R GWAS • 1.4k views
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