How to produce numerical QC summaries of affymetrix HTA2.0 chip
I am wondering if there is a relatively straightforward way in R that provides numerical QC summaries of ExpressionSet produced by justRMA function in affy from Affymetrix HTA 2.0 chip, such what can be produced by Expression console software (background, Presence calls, AUC, RLE)?
Thanks in advance.
• 1,621 views
•
link
written
by
h.moosavi57 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Job: Director/Senior Director of Research Software Engineering
written by vanessa
-
Job: Director/Senior Director of Research Software Engineering
written by vanessa
-
Blog: The Complete Guide to Metatranscriptome Sequencing
written by Novogene •
-
Normalization for microarrays >1000+ samples?
written by evmae •
-
Making a classifier across array types
written by Llander •
-
Job: Visiting Research Specialist in Life Science - University of Illinois Urbana-Champaign
written by Chris Fields
-
Job: Bioinformatics Research Consultant needed for constructing TFBS and regulatory networks from t…
written by tfhahn •
-
Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
written by Sinji
-
Annotation of exon array on probeset id and transcriptclusterids using biomaRT
written by cqtnljy •
-
Job: Experienced Bioinformatics Analyst, Bioinformatics Consulting Center, Pennsylvania State Unive…
written by Istvan Albert
