How to find target genes of long non coding RNA

Hi, I am new to long non coding RNA data analysis. How can I predict/identify target genes of long non coding? Is there any code available for this study?

rna-seq

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updated 8.9 years ago by WouterDeCoster

• written 8.9 years ago by bk11 •

1 answer

You can use starBase to discover lncRNA-miRNA and lncRNA-RBP interactions.

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written 8.9 years ago by lsp03yjh

How can bedtools be used for this propose? Is there any bash scripts available? I want to identify the co-expressed genes around 5-10 kb up/downstream of differentially expressed long non coding RNA.

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written 8.9 years ago by bk11 •

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