How map the gene position to the genomic position.
Hello everyone
Does anyone have any idea how to map gene positions to genomic positions? Please tell me about it
• 2,500 views
•
link
updated
by
Ram
•
written
by
misbahabas •
•
written
by
misbahabas •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
SpliceDB and SAM file
written by qudrat
-
Is there any script or tool to Map gene SNP positions to genome coordinates
written by misbahabas •
-
Is it possible to annotate single genes by snpeff
written by misbahabas •
-
how build database for single gene in snfeff
written by misbahabas •
-
How find variants between 26 genes sequence
written by misbahabas •
-
Problem in in alignment by muscle
written by misbahabas •
-
Extract nucleotides from fasta file by a single position
written by misbahabas •
-
Detection of CNVs from vcf file
written by misbahabas •
-
Gene network analysis
written by saj98
-
Find Location Of Refseqgene Entry?
written by amillsx •
A known, annotated gene, on a know, well-annotated genome. Look at the gff/gtf annotation. A putative gene on a draft genome? Map it with blast/blat/exonerate. If these solutions do not help you, read How To Ask Good Questions On Technical And Scientific Forums.
By aligning the gene sequence to the genomic one. Since you are dealing with multiple genomes you will need to do this independently for all of them (ref previous related questions by OP: Is there any script or tool to Map gene SNP positions to genome coordinates and Is it possible to annotate single genes by snpeff )