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Any implementation of the edgeR in python

Hi Biostars, I wonder if there is an implementation of edgeR calcNormFactors (i.e. normalization) in python. I'm not comfortable with R.

Thanks

rna-seq next-gen sequencing normalization
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updated by Lior Pachter Lior Pachter • written by Hamid • Hamid

I'm not comfortable with R.

Eh, does one ever get comfortable with R?

Anyway, as far as I know: no, there is no Python implementation. And using R is not that bad since the documentation for this package is decent.

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written by WouterDeCoster WouterDeCoster

Thanks man :) Ok, so where is that documentation?

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written by Hamid • Hamid

Here.

Please use ADD COMMENT/ADD REPLY when responding to existing posts to keep threads logically organized.

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written by GenoMax GenoMax

2 answers

There is one now: https://github.com/pachterlab/edgePython

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written by Lior Pachter Lior Pachter

https://github.com/r-bioinformatics/edgePy

Maybe this could help.

• 1 views • link
written by joonyoon.jay • joonyoon.jay

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