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Inserting k-mers into existing Graph with GATB

Hi,

I was wondering if it is possible to insert further k-mers into an existing de Bruijn Graph with GATB-core? I'd like to add another sequence into a graph by iterating over the k-mers and add them to an existing graph. Is such a functionality realized yet? If so, can one re-trigger the tip/bulge removal?

Best, TK

gatb
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updated by pierre.peterlongo pierre.peterlongo • written by TK • TK

1 answer

Hi there,

This functionality is not realized and not adapted to the minia data structure, designed to the indexation of a fixed kmer set.

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written by pierre.peterlongo pierre.peterlongo

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