trinity assembly error

0

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6.7 years ago

biologo ▴ 40

Dear friends:

i was using trinity to do de novo assembly, since the data is very large, but the RAM and CPU ls limited, so it always occur like: (it do report the problem, but it still continue the work, i just wondering whether it will cause some problems for the result. do i need to stop it and redo again.)

succeeded(24611), failed(316) 21.4045% completed.
succeeded(24612), failed(316) 21.4053% completed. Error occurred during initialization of VM java.lang.OutOfMemoryError: unable to create new native thread

We are sorry, commands in file: [failed_butterfly_commands.57971.txt] failed. :-(

Trinity run failed. Must investigate error above.

succeeded(24612), failed(317) 21.4062% completed.
succeeded(24613), failed(317) 21.407% completed.
succeeded(24614), failed(317) 21.4079% completed.

thanks

RNA-Seq • 1.0k views

ADD COMMENT • link 6.7 years ago by biologo ▴ 40

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Trinity has a very active mailing list, with active participation from its developers. If no ones answer here, you will probably have better luck there.

ADD REPLY • link 6.7 years ago by h.mon 35k

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