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Find number of X and Y chromosomes in each sample (.csv data)

I have data that contains n number of samples. One file has the average depth of each interval for each sample. Other has chromosome start and end of the intervals present in the previous file.

How can I find number of X and Y chromosomes in each sample with this information?

depthofcoverage aneuploidy
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written by alapalak • alapalak

grep the file by chromosome x and y. Please post few example lines here

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written by cpad0112 cpad0112

But that would give only the depth of chromosomes X and Y right?

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written by alapalak • alapalak

2 answers

Depth

Interval Order

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written by alapalak • alapalak

https://ibb.co/fiEx2F

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written by alapalak • alapalak

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