vcftools filter Allele frequency for polyploid variants
Hi all, I have vcf files for mitochondrial DNA, which is polyploid. I want to filter out some variants based on the AF. I tried vcftools, it showed not supported. Anyone knows how to do that?
Appreciate ahead
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alexanderkaier •
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Cindy •
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Cindy •
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vcflib and within that the vcffilter program can be used to filter polyploid VCF files. Unfortunately, vcftools does not support polyploidy.
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