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Compare two sam files

Hi all！ last time I post my question but get no perfect answer. So this time I decide to describe my question more simply.

So I want to know how to extract the CIGAR flags of the same readID from two different sam files. Thanks.

genome sequencing sam samtools
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written by jianzheng934963534 2

Hello jianzheng934963534!

Questions similar to yours can already be found at:

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Cheers!

PS: please update your previous post instead of creating a new one.
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written by Pierre Lindenbaum 17K

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