Identify up and down regulated genes in affy data
Hi All, How can I recognize (detect) ups and downs genes where "Limma" genes have been Significant? What threshold do you recommend to use in this matter? I was wondering If you could explain me why this threshold have been chosen.
Thank you so much
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j_jamal96 •
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The thread Q: Going For The Right P-Value With Limma is old but has a very good discussion on "correct" thresholds.
Hello j_jamal96!
It appears that your post has been cross-posted to another site: https://support.bioconductor.org/p/98577/
This is typically not recommended as it runs the risk of annoying people in both communities.